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Pf6+ data user guide

The Pf6+ data resource builds on the efforts of the Pf6 project and the GenRe project; integrating 5,970 WGS samples together with 7,626 Amplicon Sequencing samples.

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The following diagram describes the resource:

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We aim to:

Bring data closer to the partners:

• Curated & aggregated analysis-ready dataset

• Easy to access - no download required (direct access here).

• Limitations & possible bias are minimized and/or explicitly discussed

• Clear samples attribution & recognition

Bring partners closer to the data:

• Notebooks showcasing diversity of data, usage of tools & key visualizations:

  • Explore Pf6+ resource & contributors.

  • Visualise drug resistant mutations, haplotypes and phenotypes.

  • Infer drug resistance phenotypes from genetic data alone.

  • Contextualise Genetic Report Cards (GRCs) within Pf6+.

• Tools for the classification of resistant samples (phenotyper).

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Explore the Pf6+ dataset