malariagen_data.ag3.Ag3.phenotype_data

Ag3.phenotype_data(sample_sets: Sequence[str] | str | None = None, sample_query: str | None = None, sample_query_options: dict | None = None, cohort_size: int | None = None, min_cohort_size: int | None = None, max_cohort_size: int | None = None) → DataFrame

Load phenotypic data from insecticide resistance bioassays.

Parameters

sample_setssequence of str or str or None, optional

List of sample sets and/or releases. Can also be a single sample set or release.

sample_querystr or None, optional

A pandas query string to be evaluated against the sample metadata, to select samples to be included in the returned data.

sample_query_optionsdict or None, optional

A dictionary of arguments that will be passed through to pandas query() or eval(), e.g. parser, engine, local_dict, global_dict, resolvers.

cohort_sizeint or None, optional

Randomly down-sample to this value if the number of samples in the cohort is greater. Raise an error if the number of samples is less than this value.

min_cohort_sizeint or None, optional

Minimum cohort size. Raise an error if the number of samples is less than this value.

max_cohort_sizeint or None, optional

Randomly down-sample to this value if the number of samples in the cohort is greater.

Returns

dfDataFrame

DataFrame containing phenotype data merged with sample metadata. Includes sample identifiers, phenotypic measurements, and experimental conditions.