malariagen_data.ag3.Ag3.plot_transcript

Ag3.plot_transcript(transcript: str, sizing_mode: Literal['fixed', 'stretch_width', 'stretch_height', 'stretch_both', 'scale_width', 'scale_height', 'scale_both'] = 'stretch_width', width: int | None = None, height: int = 100, show: bool = True, x_range: Range | None = None, toolbar_location: Literal['above', 'below', 'left', 'right'] | None = 'above', title: str | bool = True) → Model | None

Plot a transcript, using bokeh.

Parameters

transcriptstr

Gene transcript identifier.

sizing_mode{‘fixed’, ‘stretch_width’, ‘stretch_height’, ‘stretch_both’, ‘scale_width’, ‘scale_height’, ‘scale_both’}, optional, default: ‘stretch_width’

Bokeh plot sizing mode, see also https://docs.bokeh.org/en/latest/docs /user_guide/basic/layouts.html#sizing-modes.

widthint or None, optional

Plot width in pixels (px).

heightint, optional, default: 100

Plot height in pixels (px).

showbool, optional, default: True

If true, show the plot. If False, do not show the plot, but return the figure.

x_rangeRange or None, optional

X axis range (for linking to other tracks).

toolbar_location{‘above’, ‘below’, ‘left’, ‘right’} or None, optional, default: ‘above’

Location of bokeh toolbar.

titlestr or bool, optional, default: True

Plot title. If True, a title may be automatically generated.

Returns

Model or None

A bokeh figure (only returned if show=False).