malariagen_data.ag3.Ag3.wgs_data_catalog

Ag3.wgs_data_catalog(sample_set: str)

Load a data catalog providing URLs for downloading BAM, VCF and Zarr files for samples in a given sample set.

Parameters

sample_setstr

Sample set identifier.

Returns

One row per sample, the columns are sample_id, the identifier of the sample, alignments_bam, the URL of the alignments BAM file, snp_genotypes_vcf, the URL of the SNP genotypes VCF file, snp_genotypes_zarr, the URL of the SNP genotypes Zarr file.