malariagen_data.ag3.Ag3.igv

Ag3.igv(region: str | Region | Mapping, tracks: List | None = None, init: bool = True) → Browser

Create an IGV browser and inject into the current notebook.

Parameters

regionstr or Region or Mapping

Region of the reference genome. Can be a contig name, region string (formatted like “{contig}:{start}-{end}”), or identifier of a genome feature such as a gene or transcript.

tracksList or None, optional

Configuration for any additional tracks.

initbool, optional, default: True

If True, call igv_notebook.init().

Returns

Browser

IGV browser.