malariagen_data.ag3.Ag3.site_annotations#
- Ag3.site_annotations(region: str | Region | Mapping, site_mask: str | None = None, inline_array: bool = True, chunks: str | Tuple[int, ...] | Callable[[Tuple[int, ...]], Tuple[int, ...]] = 'native') Dataset #
Load site annotations.
Parameters#
- regionstr or Region or Mapping
Region of the reference genome. Can be a contig name, region string (formatted like “{contig}:{start}-{end}”), or identifier of a genome feature such as a gene or transcript.
- site_maskstr or None, optional
Which site filters mask to apply. See the site_mask_ids property for available values.
- inline_arraybool, optional, default: True
Passed through to dask from_array().
- chunksstr or tuple of int or Callable[[typing.Tuple[int, …]], tuple of int], optional, default: ‘native’
If ‘auto’ let dask decide chunk size. If ‘native’ use native zarr chunks. Also, can be a target size, e.g., ‘200 MiB’, or a tuple of integers.
Returns#
- Dataset
A dataset of site annotations.