Amin1 API

This page provides a curated list of functions and properties available in the malariagen_data API relating to Anopheles minimus data.

Basic data access

contigs

Sample metadata access

sample_metadata()

Access sample metadata.

SNP data access

genome_features([attributes])	Access genome feature annotations.
genome_sequence(region[, inline_array, chunks])	Access the reference genome sequence.
open_genome()	Open the reference genome zarr.
open_snp_calls()
snp_calls(region[, site_mask, inline_array, ...])	Access SNP sites, site filters and genotype calls.