vobs updates

Technical and scientific updates from the Malaria Vector Genome Observatory.

26 October 2023 | data

Early data release for sample set 1178-VO-UG-LAWNICZAK-VMF00025

Data relating to sample set 1178-VO-UG-LAWNICZAK-VMF00025 in the Ag3.3 dataset have been released from publication embargo today:

MalariaGEN Ag3 API client
Please note that data are subject to terms of use, for more information see the MalariaGEN website or contact support@malariagen.net. See also the Ag3 API docs.
Storage URL gs://vo_agam_release_master_us_central1
Data releases available 3.0, 3.1, 3.2, 3.3, 3.4, 3.5, 3.6, 3.7, 3.8, 3.9, 3.10, 3.11, 3.12, 3.13
Results cache None
Cohorts analysis 20240924
AIM analysis 20220528
Site filters analysis dt_20200416
Software version malariagen_data 13.5.0
Client location Iowa, United States (Google Cloud us-central1)

The samples originate from a previous project on Anopheles infectivity.

sample_set sample_count study_id release terms_of_use_expiry_date
1178-VO-UG-LAWNICZAK-VMF00025 57 1178-VO-UG-LAWNICZAK 3.3 2023-10-26

The sample set includes Anopheles from Kenya and Uganda. Here is a summary of the samples by country, location, year and taxon

                                     
taxon arabiensis gambiae
sample_set country admin1_iso admin1_name year
1178-VO-UG-LAWNICZAK-VMF00025 Kenya KE-08 Homa Bay 2017 1 0
Uganda UG-E Eastern Region 2013 0 1
2016 2 24
2017 1 28

For further information see the Ag3.3 docs.