Index A | C | G | H | I | L | O | P | R | S | W A add_extra_metadata() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) aim_metadata() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) C clear_extra_metadata() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) client_location (malariagen_data.af1.Af1 property) (malariagen_data.ag3.Ag3 property) cnv_coverage_calls() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) cnv_discordant_read_calls() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) cnv_hmm() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) cohorts_metadata() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) config (malariagen_data.af1.Af1 property) (malariagen_data.ag3.Ag3 property) contigs (malariagen_data.amin1.Amin1 property) count_samples() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) coverage_calls_analysis_ids (malariagen_data.af1.Af1 property) (malariagen_data.ag3.Ag3 property) G general_metadata() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) genome_features() (malariagen_data.amin1.Amin1 method) genome_sequence() (malariagen_data.amin1.Amin1 method) H haplotypes() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) I is_accessible() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) L lookup_release() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) lookup_sample() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) O open_cnv_coverage_calls() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) open_cnv_discordant_read_calls() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) open_cnv_hmm() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) open_file() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) open_genome() (malariagen_data.amin1.Amin1 method) open_haplotype_sites() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) open_haplotypes() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) open_site_annotations() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) open_site_filters() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) open_snp_calls() (malariagen_data.amin1.Amin1 method) open_snp_genotypes() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) open_snp_sites() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) P phasing_analysis_ids (malariagen_data.af1.Af1 property) (malariagen_data.ag3.Ag3 property) plot_cnv_hmm_coverage() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) plot_cnv_hmm_coverage_track() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) plot_cnv_hmm_heatmap() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) plot_cnv_hmm_heatmap_track() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) plot_samples_bar() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) plot_samples_interactive_map() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) plot_snps() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) plot_snps_track() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) R read_files() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) releases (malariagen_data.af1.Af1 property) (malariagen_data.ag3.Ag3 property) results_cache_get() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) results_cache_set() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) S sample_metadata() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) (malariagen_data.amin1.Amin1 method) sample_sets() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) site_annotations() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) site_filters() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) site_mask_ids (malariagen_data.af1.Af1 property) (malariagen_data.ag3.Ag3 property) snp_allele_counts() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) snp_calls() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) (malariagen_data.amin1.Amin1 method) snp_dataset() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) snp_genotypes() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) snp_sites() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) snp_variants() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method) W wgs_data_catalog() (malariagen_data.af1.Af1 method) (malariagen_data.ag3.Ag3 method)