malariagen_data.ag3.Ag3.cnv_discordant_read_calls#

Ag3.cnv_discordant_read_calls(contig: str | List[str] | Tuple[str, ...], sample_sets: Sequence[str] | str | None = None, inline_array: bool = True, chunks: str | Tuple[int, ...] = 'native') Dataset#

Access CNV discordant read calls data.

Parameters#

contigstr or list of str or tuple of str

Reference genome contig name. See the contigs property for valid contig names. Can also be a sequence (e.g., list) of contigs.

sample_setssequence of str or str or None, optional

List of sample sets and/or releases. Can also be a single sample set or release.

inline_arraybool, optional, default: True

Passed through to dask from_array().

chunksstr or tuple of int, optional, default: ‘native’

If ‘auto’ let dask decide chunk size. If ‘native’ use native zarr chunks. Also, can be a target size, e.g., ‘200 MiB’, or a tuple of integers.

Returns#

Dataset

An xarray dataset of CNV alleles and genotypes.