malariagen_data.ag3.Ag3.plot_samples_interactive_map

Ag3.plot_samples_interactive_map(sample_sets: Sequence[str] | str | None = None, sample_query: str | None = None, basemap: str | Dict | TileLayer | TileProvider | None = 'mapnik', center: Tuple[int, int] = (-2, 20), zoom: int = 3, height: int | str = 500, width: int | str = '100%', min_samples: int = 1, count_by: str = 'taxon') → Map

Plot an interactive map showing sampling locations using ipyleaflet.

Parameters

sample_setssequence of str or str or None, optional

List of sample sets and/or releases. Can also be a single sample set or release.

sample_querystr or None, optional

A pandas query string to be evaluated against the sample metadata, to select samples to be included in the returned data.

basemapstr or Dict or TileLayer or TileProvider or None, optional, default: ‘mapnik’

Basemap from ipyleaflet or other TileLayer provider. Strings are abbreviations mapped to corresponding basemaps, available values are [‘mapnik’, ‘natgeoworldmap’, ‘opentopomap’, ‘positron’, ‘satellite’, ‘worldimagery’, ‘worldstreetmap’, ‘worldtopomap’].

centertuple[int, int], optional, default: (-2, 20)

Location to center the map.

zoomint, optional, default: 3

Initial zoom level.

heightint or str, optional, default: 500

Height of the map in pixels (px) or other units.

widthint or str, optional, default: ‘100%’

Width of the map in pixels (px) or other units.

min_samplesint, optional, default: 1

Minimum number of samples required to show a marker for a given location.

count_bystr, optional, default: ‘taxon’

Metadata column to report counts of samples by for each location.

Returns

Map

Ipyleaflet map widget.