.md .pdf

repository open issue

MalariaGEN parasite data user guide

Welcome to this guide to accessing analysis-ready genomic data resources on malaria parasites provided by the Malaria Genomic Epidemiology Network (MalariaGEN). To get started, please visit one of the pages below.

Malaria Parasite Data Access

• Malaria Parasite Data Access

Pf7

• Pf7 Data Access
• Pf7 Analysis Guides: Summarise Pf7 Data
  • Summarise Samples by Administrative Division
  • Visualising sample collections over time
  • Barplot of Samples by Country
  • Summarise Genetic Variants
  • Plot Global Map of Samples
• Pf7 Analysis Guides: Study Evolution Against Malaria Control Measures
  • Drug Resistance Frequencies Across Pf7
  • Plot Map of Chloroquine Resistance
  • Summarise hrp2 and hrp3 Deletions
  • Visualise hrp2 and hrp3 Deletions
  • Analyse csp C-Terminal Variation
• Pf7 Analysis Guides: Population Structure and Selection
  • Principal Coordinate Analysis
  • Geographic patterns of population differentiation and gene flow
  • Neighbour Joining Tree for sWGA vs. gDNA
  • Plot eba175 C Allele Proportions
• Pf7 API

Pv4

• Pv4 Data Access
• Pv4 API

---

next

Malaria Parasite Data Access