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MalariaGEN parasite data user guide

Welcome to this guide to accessing analysis-ready genomic data resources on malaria parasites provided by the Malaria Genomic Epidemiology Network (MalariaGEN). To get started, please visit one of the pages below.

Malaria Parasite Google Cloud Data Access

• Malaria Parasite Google Cloud Data Access

Pf8

• Pf8 Data Access
• Pf8 Analysis Guides: Useful Genomics How-Tos
  • Visualizing genomic regions of Pf8 samples with IGV-notebook
• Pf8 Analysis Guides: Summarise Pf8 Data
  • Create sample location summary table
  • Visualising sample collections over time
  • Plot sample collection per country
  • Summarise genetic variant types
  • Create map of sample collection locations
• Pf8 Analysis Guides: Study Evolution Against Malaria Control Measures
  • Plot drug resistance frequencies
  • Explore drug resistance trends in Africa
  • Plot copy number variation (CNV) trends
  • Explore hrp2 and hrp3 deletion breakpoints
  • Drug resistance in Pf7 vs Pf8
• Pf8 Analysis Guides: Population Structure and Selection
  • Principal Coordinate Analysis
  • Create a Neighbour Joining Tree
  • Explore Fws across populations
• Pf8 API

Pf7

• Pf7 Data Access
• Pf7 Analysis Guides: Summarise Pf7 Data
  • Summarise Samples by Administrative Division
  • Visualising sample collections over time
  • Barplot of Samples by Country
  • Summarise Genetic Variants
  • Plot Global Map of Samples
• Pf7 Analysis Guides: Study Evolution Against Malaria Control Measures
  • Drug Resistance Frequencies Across Pf7
  • Plot Map of Chloroquine Resistance
  • Summarise hrp2 and hrp3 Deletions
  • Visualise hrp2 and hrp3 Deletions
  • Analyse csp C-Terminal Variation
• Pf7 Analysis Guides: Population Structure and Selection
  • Principal Coordinate Analysis
  • Geographic patterns of population differentiation and gene flow
  • Neighbour Joining Tree for sWGA vs. gDNA
  • Plot eba175 C Allele Proportions
• Pf7 API

Pv4

• Pv4 Data Access
• Pv4 API

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Malaria Parasite Google Cloud Data Access