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Pf8 Analysis Guides: Summarise Pf8 Data

The notebooks below provide guides to summarising data from the Pf8 data release.

All of these notebooks are executable with Google Colaboratory, a free interactive computing service. To run a notebook for yourself, simply click the launch icon (shaped like a rocket) at the top of the notebook and select “Colab”.

• Create sample location summary table
• Visualising sample collections over time
• Plot sample collection per country
• Summarise genetic variant types
• Create map of sample collection locations

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Visualizing genomic regions of Pf8 samples with IGV-notebook

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Create sample location summary table