MalariaGEN parasite data user guide
MalariaGEN parasite data user guide
Malaria Parasite Google Cloud Data Access
Malaria Parasite Google Cloud Data Access
Pf8
Pf8 Data Access
Pf8 Analysis Guides:
Useful Genomics How-Tos
Visualizing genomic regions of Pf8 samples with IGV-notebook
Pf8 Analysis Guides:
Summarise Pf8 Data
Create sample location summary table
Visualising sample collections over time
Plot sample collection per country
Summarise genetic variant types
Create map of sample collection locations
Pf8 Analysis Guides:
Study Evolution Against Malaria Control Measures
Plot drug resistance frequencies
Explore drug resistance trends in Africa
Plot copy number variation (CNV) trends
Explore
hrp2
and
hrp3
deletion breakpoints
Drug resistance in Pf7 vs Pf8
Pf8 Analysis Guides:
Population Structure and Selection
Principal Coordinate Analysis
Create a Neighbour Joining Tree
Explore Fws across populations
Pf8 API
Pf7
Pf7 Data Access
Pf7 Analysis Guides:
Summarise Pf7 Data
Summarise Samples by Administrative Division
Visualising sample collections over time
Barplot of Samples by Country
Summarise Genetic Variants
Plot Global Map of Samples
Pf7 Analysis Guides:
Study Evolution Against Malaria Control Measures
Drug Resistance Frequencies Across Pf7
Plot Map of Chloroquine Resistance
Summarise
hrp2
and
hrp3
Deletions
Visualise
hrp2
and
hrp3
Deletions
Analyse csp C-Terminal Variation
Pf7 Analysis Guides:
Population Structure and Selection
Principal Coordinate Analysis
Geographic patterns of population differentiation and gene flow
Neighbour Joining Tree for sWGA vs. gDNA
Plot
eba175
C Allele Proportions
Pf7 API
Pv4
Pv4 Data Access
Pv4 API
repository
open issue
Index
G
|
P
|
S
|
V
G
genome_features() (malariagen_data.pf7.Pf7 method)
(malariagen_data.pv4.Pv4 method)
genome_sequence() (malariagen_data.pf7.Pf7 method)
(malariagen_data.pv4.Pv4 method)
P
Pf7() (in module malariagen_data.pf7)
Pv4() (in module malariagen_data.pv4)
S
sample_metadata() (malariagen_data.pf7.Pf7 method)
(malariagen_data.pv4.Pv4 method)
V
variant_calls() (malariagen_data.pf7.Pf7 method)
(malariagen_data.pv4.Pv4 method)
