H12 / Burkina Faso An. coluzzii / Chromosome 3 / #2

This page describes a signal of selection found in the Burkina Faso An. coluzzii population using the H12 (Garud et al. 20XX) statistic.The focus of this signal is on chromosome arm 3L between positions 11,200,001 and 11,240,000. The evidence supporting this signal is weak (\Delta_{i} < 50 on one or both flanks).

Signal location. Blue markers show the values of the selection statistic. The dashed black line shows the fitted peak model. The shaded red area shows the focus of the selection signal. The shaded blue area shows the genomic region in linkage with the selection event. Use the mouse wheel or the controls at the top right of the plot to zoom in, and hover over genes to see gene names and descriptions.

Genes

The following 2 genes overlap the focal region: AGAP010815 (TEP1 - thioester-containing protein 1), AGAP010816 (TEP3 - thioester-containing protein 3).

The following 4 genes are within 50 kbp of the focal region: AGAP010813 (TEP18 - thioester-containing protein 18), AGAP010814 (TEP6 - thioester-containing protein 6), AGAP010817, AGAP010818 (TEP11 - thioester-containing protein 11).

Key to insecticide resistance candidate gene types: 1 metabolic; 2 target-site; 3 behavioural; 4 cuticular.

Diagnostics

The information below provides some diagnostics from the Peak modelling algorithm.

Selection signal in context. @@TODO

Peak targetting. @@TODO

Peak fitting diagnostics. @@TODO

Model fit reports

Left flank, peak model:

[[Model]]
    Model(exponential)
[[Fit Statistics]]
    # function evals   = 44
    # data points      = 147
    # variables        = 3
    chi-square         = 0.124
    reduced chi-square = 0.001
    Akaike info crit   = -1034.049
    Bayesian info crit = -1025.078
[[Variables]]
    amplitude:   0.80070447 +/- 0.023821 (2.98%) (init= 0.5)
    decay:       0.15000000 +/- 0.007370 (4.91%) (init= 0.5)
    c:           0.02783632 +/- 0.002558 (9.19%) (init= 0.03)
    cap:         1 (fixed)
[[Correlations]] (unreported correlations are <  0.100)
    C(amplitude, decay)          = -0.581
    C(decay, c)                  = -0.233

Right flank, peak model:

[[Model]]
    Model(exponential)
[[Fit Statistics]]
    # function evals   = 27
    # data points      = 147
    # variables        = 3
    chi-square         = 1.380
    reduced chi-square = 0.010
    Akaike info crit   = -680.288
    Bayesian info crit = -671.317
[[Variables]]
    amplitude:   0.34675102 +/- 0.042677 (12.31%) (init= 0.5)
    decay:       0.92197787 +/- 0.209281 (22.70%) (init= 0.5)
    c:           0.00792414 +/- 0.012780 (161.29%) (init= 0.03)
    cap:         1 (fixed)
[[Correlations]] (unreported correlations are <  0.100)
    C(decay, c)                  = -0.657
    C(amplitude, decay)          = -0.543

Left flank, null model:

[[Model]]
    Model(constant)
[[Fit Statistics]]
    # function evals   = 6
    # data points      = 146
    # variables        = 1
    chi-square         = 1.057
    reduced chi-square = 0.007
    Akaike info crit   = -717.511
    Bayesian info crit = -714.527
[[Variables]]
    c:   0.04609656 +/- 0.007066 (15.33%) (init= 0.03)

Right flank, null model:

[[Model]]
    Model(constant)
[[Fit Statistics]]
    # function evals   = 6
    # data points      = 146
    # variables        = 1
    chi-square         = 1.785
    reduced chi-square = 0.012
    Akaike info crit   = -641.007
    Bayesian info crit = -638.023
[[Variables]]
    c:   0.05418022 +/- 0.009182 (16.95%) (init= 0.03)

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