Uganda An. gambiae

The tables below list signals of recent selection discovered in the Uganda An. gambiae population.

Chromosome arm 2R

Signal Statistic Population Focus Peak model \Delta_{i} Max. percentile Known locus
IHS/UGS/2/1 IHS Uganda An. gambiae 2R:28,280,000-28,700,000 1,661 100.0% Cyp6p
H12/UGS/2/1 H12 Uganda An. gambiae 2R:28,460,000-28,500,000 1,567 99.2% Cyp6p
XPEHH/UGS.GWA/2/1 XPEHH Uganda An. gambiae 2R:28,460,000-28,600,000 758 99.7% Cyp6p
XPEHH/UGS.BFS/2/1 XPEHH Uganda An. gambiae 2R:27,980,000-28,280,000 753 99.9%  
XPEHH/UGS.CMS/2/1 XPEHH Uganda An. gambiae 2R:28,860,000-28,980,000 645 99.7%  
XPEHH/UGS.BFS/2/3 XPEHH Uganda An. gambiae 2R:57,280,000-57,620,000 376 99.5%  
XPEHH/UGS.CMS/2/2 XPEHH Uganda An. gambiae 2R:58,120,000-58,520,000 348 99.6%  
XPEHH/UGS.GWA/2/3 XPEHH Uganda An. gambiae 2R:50,960,000-51,100,000 225 90.2%  
IHS/UGS/2/5 IHS Uganda An. gambiae 2R:40,160,000-40,200,000 132 98.3%  
H12/UGS/2/4 H12 Uganda An. gambiae 2R:51,020,000-51,120,000 117 94.7%  

Chromosome arm 2L

Signal Statistic Population Focus Peak model \Delta_{i} Max. percentile Known locus
H12/UGS/2/2 H12 Uganda An. gambiae 2L:1,814,895-3,094,895 1,377 100.0% Vgsc
H12/UGS/2/3 H12 Uganda An. gambiae 2L:34,074,895-34,134,895 1,193 98.1%  
IHS/UGS/2/2 IHS Uganda An. gambiae 2L:33,934,895-34,194,895 860 100.0%  
XPEHH/UGS.BFS/2/2 XPEHH Uganda An. gambiae 2L:34,134,895-34,234,895 487 98.3%  
XPEHH/UGS.GWA/2/2 XPEHH Uganda An. gambiae 2L:34,114,895-34,214,895 422 95.2%  
XPEHH/UGS.CMS/2/3 XPEHH Uganda An. gambiae 2L:34,134,895-34,234,895 342 99.2%  
IHS/UGS/2/3 IHS Uganda An. gambiae 2L:14,914,895-15,074,895 282 98.9%  
IHS/UGS/2/4 IHS Uganda An. gambiae 2L:42,794,895-42,834,895 155 97.5%  
XPEHH/UGS.BFS/2/4 XPEHH Uganda An. gambiae 2L:14,374,895-14,554,895 152 87.9%  
IHS/UGS/2/6 IHS Uganda An. gambiae 2L:43,554,895-43,674,895 118 97.5%  
H12/UGS/2/5 H12 Uganda An. gambiae 2L:42,774,895-42,814,895 98 94.4%  
XPEHH/UGS.CMS/2/4 XPEHH Uganda An. gambiae 2L:14,374,895-14,554,895 92 91.4%  

Chromosome arm 3R

Signal Statistic Population Focus Peak model \Delta_{i} Max. percentile Known locus
H12/UGS/3/1 H12 Uganda An. gambiae 3R:28,560,000-28,600,000 876 97.3% Gste
XPEHH/UGS.GWA/3/1 XPEHH Uganda An. gambiae 3R:28,540,000-28,600,000 662 100.0% Gste
IHS/UGS/3/1 IHS Uganda An. gambiae 3R:28,440,000-28,640,000 493 99.7% Gste
H12/UGS/3/2 H12 Uganda An. gambiae 3R:49,660,000-49,880,000 427 93.3%  
IHS/UGS/3/2 IHS Uganda An. gambiae 3R:18,760,000-19,000,000 327 92.9%  
XPEHH/UGS.CMS/3/1 XPEHH Uganda An. gambiae 3R:37,120,000-37,200,000 300 99.5%  
H12/UGS/3/3 H12 Uganda An. gambiae 3R:44,380,000-45,140,000 292 95.0%  
XPEHH/UGS.CMS/3/2 XPEHH Uganda An. gambiae 3R:43,940,000-43,980,000 263 99.7%  
XPEHH/UGS.BFS/3/1 XPEHH Uganda An. gambiae 3R:37,140,000-37,220,000 247 99.6%  
XPEHH/UGS.BFS/3/2 XPEHH Uganda An. gambiae 3R:43,920,000-43,980,000 214 99.7%  
H12/UGS/3/4 H12 Uganda An. gambiae 3R:18,780,000-19,000,000 210 72.4%  
H12/UGS/3/5 H12 Uganda An. gambiae 3R:36,460,000-37,520,000 206 94.0%  
XPEHH/UGS.CMS/3/3 XPEHH Uganda An. gambiae 3R:6,360,000-6,400,000 201 99.9%  
IHS/UGS/3/3 IHS Uganda An. gambiae 3R:43,800,000-43,920,000 160 97.7%  
XPEHH/UGS.BFS/3/4 XPEHH Uganda An. gambiae 3R:6,360,000-6,400,000 137 99.9%  
XPEHH/UGS.GWA/3/2 XPEHH Uganda An. gambiae 3R:6,360,000-6,400,000 120 99.3%  
XPEHH/UGS.BFS/3/6 XPEHH Uganda An. gambiae 3R:44,440,000-44,520,000 95 99.7%  
XPEHH/UGS.GWA/3/3 XPEHH Uganda An. gambiae 3R:43,940,000-44,000,000 93 99.7%  
XPEHH/UGS.BFS/3/5 XPEHH Uganda An. gambiae 3R:49,540,000-49,660,000 93 98.9%  

Chromosome arm 3L

Signal Statistic Population Focus Peak model \Delta_{i} Max. percentile Known locus
XPEHH/UGS.CMS/3/4 XPEHH Uganda An. gambiae 3L:16,319,316-16,359,316 149 100.0%  
XPEHH/UGS.BFS/3/3 XPEHH Uganda An. gambiae 3L:16,319,316-16,359,316 138 100.0%  

Chromosome X

Signal Statistic Population Focus Peak model \Delta_{i} Max. percentile Known locus
IHS/UGS/X/1 IHS Uganda An. gambiae X:14,640,000-15,360,000 517 96.7% Cyp9k1
H12/UGS/X/1 H12 Uganda An. gambiae X:15,160,000-15,480,000 348 94.9% Cyp9k1
XPEHH/UGS.CMS/X/1 XPEHH Uganda An. gambiae X:15,240,000-15,460,000 284 99.9% Cyp9k1
XPEHH/UGS.BFS/X/1 XPEHH Uganda An. gambiae X:14,960,000-15,320,000 204 89.8% Cyp9k1

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